Overview
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Learn to use tools from the Bioconductor project to perform analysis of genomic data. This is the fifth course in the Genomic Big Data Specialization from Johns Hopkins University.
Syllabus
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- Week One
- The class will cover how to install and use Bioconductor software. We will discuss common data structures, including ExpressionSets, SummarizedExperiment and GRanges used across several types of analyses.
- Week Two
- In this week we will learn how to represent and compute on biological sequences, both at the whole-genome level and at the level of millions of short reads.
- Week Three
- In this week we will cover Basic Data Types, ExpressionSet, biomaRt, and R S4.
- Week Four
- In this week, we will cover Getting data in Bioconductor, Rsamtools, oligo, limma, and minfi
